3	./NRR/test_pushme_pullyou.m
1	./NRR/hist_entropy.m
4	./NRR/OJtest.m
1	./NRR/edges_from_triangulation.m
3	./NRR/objective_function.m
3	./NRR/pick_skull_points.m
2	./NRR/plot_surf.m
1	./NRR/interlace.m
2	./NRR/test_affine_trans.m
3	./NRR/OJshape.m
1	./NRR/README
1	./NRR/normalise_image.m
3	./NRR/OJtest2.m
6	./NRR/vent_stuff.m
2	./NRR/inverse_affine_trans.m
2	./NRR/eval_affine_objective_function.m
5	./NRR/test_stuff.m
1	./NRR/discrepancy_image.m
5	./NRR/nrr_registration.m
1	./NRR/test_scale_image.m
2	./NRR/nrr_trans.m
5	./NRR/test_disc.m
3	./NRR/demo_various_splines.m
2	./NRR/test_nrr_warps.m
4	./NRR/ani_warp.m
7	./NRR/register2.m
3	./NRR/affine_registration.m
1	./NRR/pull_back.m
2	./NRR/reg_params.m
3	./NRR/eval_nrr_objective_function.m
4	./NRR/green.m
1	./NRR/image_preprocessing.m
1	./NRR/calc_MML.m
4	./NRR/region_of_interest.m
1	./NRR/get_weights.m
2	./NRR/reg_params2.m
1	./NRR/push_forward.m
1	./NRR/mad_pixel_fuck.m
2	./NRR/scale_image.m
2	./NRR/affine_trans.m
7	./NRR/test_stuff2.m
7	./NRR/register.m
6	./NRR/pick_disc_points.m
2	./NRR/warpy_entropy_test.m
125	./NRR
2	./Stats/st_post_mal.m
1	./Stats/Contents.m
1	./Stats/st_sweep.m
6	./Stats/st_robustpca.m
5	./Stats/st_nanmvnorm.m
10	./Stats/st_impute.m
3	./Stats/st_eig.m
9	./Stats/st_incremental_pca.m
2	./Stats/st_mah.m
4	./Stats/st_pca.m
2	./Stats/st_nancov.c
1	./Stats/st_nancov.m
1	./Stats/st_nanmean.m
2	./Stats/st_pre_mal.m
50	./Stats
2	./Utils/u_convertpointstoradial.m
2	./Utils/u_gplot.m
2	./Utils/u_loadmarkedimagelist.m
3	./Utils/u_suptitle.m
14	./Utils/u_roipoly.cxx
2	./Utils/u_interpimage.m
2	./Utils/u_loadSMDpoints.m
4	./Utils/u_parsePartsfile.m
3	./Utils/Contents.m
2	./Utils/u_gridnd.m
2	./Utils/u_createsequencelist.m
3	./Utils/u_sphere_tesselation.m
2	./Utils/u_readParameter.m
4	./Utils/u_dijkstra.m
3	./Utils/u_newfunction.m
2	./Utils/readanalyze.m
4	./Utils/readheader.m
2	./Utils/saveheader.m
1	./Utils/u_roipoly.m
5	./Utils/u_packargs.m
1	./Utils/u_ensure_filesep_terminated.m
3	./Utils/makeheader.m
1	./Utils/readoneslice.m
2	./Utils/u_getimage.m
2	./Utils/u_parsePTSfile.m
1	./Utils/u_mirrormarkedimage.m
2	./Utils/u_defaultparams.m
2	./Utils/u_convertradialpoints.m
2	./Utils/u_saveframes.m
1	./Utils/u_savePTSfile.m
1	./Utils/u_partsGraph.m
2	./Utils/u_imread.m
7	./Utils/u_parseSMDfile.m
2	./Utils/writeanalyze.m
6	./Utils/u_gaussimagepyramid.m
100	./Utils
2	./Models/tools/private/plot_points.m
3	./Models/tools/private
1	./Models/tools/m_tool_show_search.m
4	./Models/tools/m_tool_interact_pdm.m
1	./Models/tools/interact.res
3	./Models/tools/m_tool_showapm.m
3	./Models/tools/m_tool_showpdm.m
2	./Models/tools/m_tool_showpfm.m
18	./Models/tools
2	./Models/@sphere_param/sphere_param.m
1	./Models/@sphere_param/get.m
2	./Models/@sphere_param/random_cauchy_params.m
1	./Models/@sphere_param/apply_param.m
2	./Models/@sphere_param/add_cauchy.m
9	./Models/@sphere_param
3	./Models/@m_tps_warper/shape_free_sample.m
4	./Models/@m_tps_warper/warped_instance.m
3	./Models/@m_tps_warper/shape_normalise.m
1	./Models/@m_tps_warper/subsref.m
2	./Models/@m_tps_warper/m_tps_warper.m
14	./Models/@m_tps_warper
2	./Models/@line_param/est_error.m
1	./Models/@line_param/display.m
1	./Models/@line_param/get.m
1	./Models/@line_param/set.m
1	./Models/@line_param/double.m
2	./Models/@line_param/line_param.m
1	./Models/@line_param/random_cauchy_params.m
2	./Models/@line_param/apply_param.m
1	./Models/@line_param/add_cauchy.m
13	./Models/@line_param
3	./Models/@m_delaunay_warper/shape_free_sample.m
5	./Models/@m_delaunay_warper/m_delaunay_warper.m
5	./Models/@m_delaunay_warper/warped_instance.m
6	./Models/@m_delaunay_warper/shape_normalise.m
1	./Models/@m_delaunay_warper/subsref.m
21	./Models/@m_delaunay_warper
3	./Models/@m_slice_3d_warper/shape_free_sample.m
1	./Models/@m_slice_3d_warper/warped_instance.m
2	./Models/@m_slice_3d_warper/m_slice_3d_warper.m
1	./Models/@m_slice_3d_warper/subsref.m
8	./Models/@m_slice_3d_warper
5	./Models/private/m_transform_corrs.m
4	./Models/private/m_incident_tri.c
1	./Models/private/m_incident_tri.m
2	./Models/private/m_fv2tri.m
3	./Models/private/m_nearest_pt.c
1	./Models/private/m_nearest_pt.m
17	./Models/private
1	./Models/@circle_param/display.m
1	./Models/@circle_param/circle_param.m
1	./Models/@circle_param/random_cauchy_params.m
2	./Models/@circle_param/apply_param.m
1	./Models/@circle_param/add_cauchy.m
7	./Models/@circle_param
2	./Models/m_asminstance.m
1	./Models/m_asmnormaliseProfiles.m
3	./Models/m_kotcheff_objective_function.m
1	./Models/m_txminstance.m
1	./Models/m_asmparams.m
5	./Models/m_asmsampleProfiles.m
1	./Models/m_denormaliseimage.m
4	./Models/Contents.m
2	./Models/m_mraamsearch.m
16	./Models/m_pdmparams.m
22	./Models/m_autolandmark.m
2	./Models/m_txmparams.m
8	./Models/m_asmsearch.m
1	./Models/m_smparams.m
2	./Models/m_apmstoim.m
2	./Models/m_asmpartNormals.m
2	./Models/m_normaliseimages.m
2	./Models/m_apmparams.m
1	./Models/m_pdminstance.m
10	./Models/m_trainaamfromdata.m
3	./Models/m_trainsm.m
8	./Models/m_trainapm.m
2	./Models/m_trainasm.m
1	./Models/m_normaliseimage.m
4	./Models/m_apminstance.m
9	./Models/m_asmsearchProfiles.m
4	./Models/m_trainpdm.m
8	./Models/m_trainpfm.m
5	./Models/m_traintxm.m
1	./Models/m_pfminstance.m
2	./Models/m_trainmraam.m
2	./Models/m_trainmrapm.m
7	./Models/m_aamsearch.m
2	./Models/m_pfmparams.m
1	./Models/m_sminstance.m
7	./Models/m_mdl_objective_function.m
2	./Models/m_apmreconstruct.m
265	./Models
4	./Repository.txt
545	.