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[News] Openness/Open Source Spreads to Genomics Research

  • Subject: [News] Openness/Open Source Spreads to Genomics Research
  • From: Roy Schestowitz <newsgroups@xxxxxxxxxxxxxxx>
  • Date: Sun, 13 Sep 2009 08:04:20 +0100
  • Followup-to: comp.os.linux.advocacy
  • Newsgroups: comp.os.linux.advocacy
  • User-agent: KNode/4.3.1
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Making Open Source Their Business, Recombinant Helps UMMS Deploy i2b2 Platform

,----[ Quote ]
| The i2b2 platform helps clinician-scientists manage and analyze clinical data for 
| population-based and genomics research and to run clinical trials.
`----

http://www.genomeweb.com/informatics/making-open-source-their-business-recombinant-helps-umms-deploy-i2b2-platform

Itâs good to be open

,----[ Quote ]
| Thatâs the title of a panel discussion which took place at Londonâs BFI last night. 
| Chaired by Russell Davies from the Really Interesting Group the discussion set out 
| to explore the development and future of open source. Conversations rocked up 
| because the head of user experience design for Nokiaâs Maemo unit, Harri Kiljander, 
| made up one third of the panel discussing the topic.
`----

http://conversations.nokia.com/2009/09/11/its-good-to-be-open/


Recent:

The Freedom to Cure Cancer: Open Source Software in Genomics

,----[ Quote ]
| The Genome Center at Washington University in St. Louis has been at the
| forefront of genomics since its formation in 1990. Helping to lead the
| sequencing and analysis of the first multi-cellular organism, C. elegans, and
| the Human Genome Project, The Genome Center has long leveraged
| free/libre/open source software (FLOSS). One hallmark of these sequencing
| efforts has been the rapid dissemination of sequence data for all to download
| and use.
`----

http://en.oreilly.com/oscon2009/public/schedule/detail/7985


Related:

The Human Genome Goes Wiki

,----[ Quote ]
| A group of scientists aims to post thousands of entries on Wikipedia that
| describe the workings of individual human genes. The team realizes the
| potential for mischief -- anyone can change a Wikipedia article, regardless
| of their expertise or intent -- but were convinced by the popularity of the
| online encyclopedia and its volunteer overseers' general quickness.
`----

http://www.linuxinsider.com/story/The-Human-Genome-Goes-Wiki-63745.html


'Genome Project' Led by Open Source HPC

,----[ Quote ]
| The BLAST tool module is highly compatible to run on Linux
| platform with advantage of considerably faster result compared
| to running on other platform.
`----

http://www.zdnet.co.kr/etc/eyeon/enterprise/0,39036961,39153485,00.htm


Human Genome Pioneer and Open-Source Junkie Enters Genomic X-Prize

,----[ Quote ]
| Church Harvard geneticist and Human Genome Project leader George Church has
| entered a team in the Archon X PRIZE for Genomics contest. He's an early
| favorite in the $10 million contest, and -- good news for the rest of us --
| he's an open-source software fan.  
`----

http://blog.wired.com/wiredscience/2007/12/human-genome-pi.html


Helicos Launches Open Access Web Site With Microbial Genome Data

,----[ Quote ]
| In addition to Helicos data sets, the new Web site is also a gateway to
| Helicos' open source project, which includes downloadable source code and
| software documentation and is hosted on the Web site http://sourceforge.net/.
`----

http://www.marketwatch.com/news/story/Helicos-Launches-Open-Access-Web/story.aspx?guid=%7B96281BF7-6201-42B8-8462-2B54EA0C5356%7D


Born a Creationist, Merckâs Schadt Leads Open Source Effort to Unravel Genome

,----[ Quote ]
| One of the worldâs brightest minds at analyzing human DNA was born into a
| family of creationists. When he was 17 and graduating from high school in a
| rural area of southwestern Michigan, Eric Schadt couldnât even imagine going
| to college.
|
| âMy parents were very religious,â Schadt told me on a visit to his office
| last week. They didnât emphasize education, and neither did the community, he
| says. âHigher education just wasnât something that people looked forward to
| there. I didnât really know what college was.â
`----

http://www.xconomy.com/seattle/2009/03/13/born-a-creationist-mercks-schadt-leads-open-source-effort-to-unravel-genome/
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